Scale-up at Santiago Lab

Scale-up of organic reactions

At Santiago, we have broad experience with the scale-up of various processes. One of the projects we have been working on was purifying 350 kg of crude oil with an active ingredient. However, due to the low stability of the compound under UV light and alkaline conditions, the whole project had to be handled under extra protection protocol. We were proud of our work where we effectively managed to reduce the length of the entire purification process from days to hours and successfully refined 350 kg of oil altogether in just 14 days.


Our largest project ready to be shipped


As you can imagine, transferring the synthesis of small molecules from mg scale to hundreds of g or kg is not a simple task. You cannot just take a bigger reaction flask and hope that the reaction will behave similarly. It is because processes that can easily be performed on a small scale in the lab simply do not work on a large scale without significant modification.

In this post, we briefly mention some of the aspects that you must keep in mind when trying to scale up your chemical synthesis.


Chemical point of view of scale-up

Very often, due to the limited amounts of chemicals or their price, or a complicated mixture of side products, the synthetic pathway that once worked on a small scale must be altered. At Santiago, we are always trying to find the best possible paths that would significantly limit the number of reaction steps or purifications, which can save a significant amount of time and, therefore, money.


Physical point of view of scale-up

Regarding physic laws, the most crucial factor that affects scale-up is the square-cube law. This law says that while the surface area increases as a square, the volume must go up as a cube (for illustration, we have added a table with typical values for a different type of scale). This affects the thermodynamic balance significantly during the reactions. More specifically, the rate at which heat can be added and, more crucially, removed during an exothermic reaction. This can lead to unwanted runaway reactions that may be very dangerous (not mentioning the cost of the chemicals) on a large scale.


  Reactor Volume (L) Surface Area (m2) SA/VR ratio (m2/L) SA/V ratio (to 1 L reactor)
Test-tube 0,001 0,0004 0,407 9,3
Laboratory 1 0,044 0,044 1
Kilo-lab 10 0,209 0,021 0,48
Pilot plant 1000 4,75 0,0048 0,11
Production 10000 22,6 0,0026 0,05


Another vital aspect of scale-up reaction is mixing. Whereas you can easily stir small reactions with a magnetic stirrer bar, large scale reactions usually require a different type of stirring. Therefore, a mechanically-driven overhead stirrer is commonly used, and many times also various baffles must be added to the reactor to ensure proper mixing.

Reactor for scale-up


Everything is more complicated on a bigger scale—even the most straightforward operation like aqueous work-up.

Let´s imagine that you have just finished a reaction on a 100 mg scale with some reagents that need to be removed by a standard aqueous work-up in the separation funnel. Usually, you do not think a lot about how much water you must add to ensure the proper removal of unwanted reagents. However, when you are scaling up the reaction and now doing it on a 50 or 100 g scale, you must be sure to add a sufficient amount of water to remove everything you do not want in your reaction mixture.

During some of our projects at Santiago lab, we have been dealing with undesired side reactions for quite a long time. In the end, we found out that this was caused by reagents from previous reaction steps that were not completely removed even after washing with more than 4 L of water in total (and of course, there were not visible on LC-MS nor NMR to complicate it properly).



Purification is another crucial factor during scale-up. Intermediates are usually purified by small silica columns or even on preparative TLCs (thin layer chromatography) for small-scale reactions. On the other hand, these efficient and easy purification techniques are challenging and expensive on a large scale. Sometimes there are even impossible to perform, just because a column so big that you need will cost more than the whole lab.

Due to these complications, some older techniques such as crystallisation or distillation are used during scale-up synthesis. Sometimes even the precipitation can help you and remove many unwanted side products.


Santiago lab and scale-up

At Santiago lab, we are ready to help you scale up your process or synthesise your desired products on a large scale.

We recently bought a brand new jacketed 20 L lab reactor from company ASYNT. This reactor, coupled with a temperature control system from JULABO, allows us to perform a big scale reaction in a wide range of temperatures (-45 °C – 200 °C).

In addition to a 20 L jacketed reactor, Santiago lab also possesses a 2.5 L stainless steel reactor for reactions under high pressure (such as hydrogenation).


Stainless steel reactor for scale-up


For purifications, Santiago lab is equipped with fully automated flash chromatography systems of company ECOM s.r.o. These modern machines allow us to perform purification with columns from 4 g to 5 kg of silica or C18. This enables us to purify even complicated reaction mixtures up to 200 g.


Automated flash chromatography system for scale-up


You can see that at Santiago lab, we are ready to help you with a scale-up synthesis or custom synthesis. If you would like to know more, or we can help you with your research, write an email to Krystof Sigut on or reach him on the phone +420 776 750 591.

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We will respond as soon as possible, typically within 48 hours.



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    A. Shanley, “Scale-Up: Getting It Right the First Time,” Pharmaceutical Technology, 43, 16-20 (2019).

    J. B. Sperry et al., “Process Safety in the Pharmaceutical Industry—Part I: Thermal and Reaction Hazard Evaluation Processes and Techniques,” Organic Process Research & Development24, 2529–2548 (2020).